Report for Sequence Feature Glyma17g36770
Feature Type: gene_model
Chromosome: Gm17
Start: 40700736
stop: 40703067
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g36770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G19360 AT
Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferase family protein | chr1:6690672-6692211 REVERSE LENGTH=428
SoyBase E_val: 0 ISS
GO:0009744 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009750 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus
SoyBase N/A ISS
GO:0080147 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell development
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
PTHR10994 Panther
RETICULON/NOGO
JGI ISS
PTHR10994:SF3 Panther
HISTONE H4 - RELATED
JGI ISS
PF03407 PFAM
Nucleotide-diphospho-sugar transferase
JGI ISS
UniRef100_I1M8F0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8F0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g36770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g36770
Paralog Evidence Comments
Glyma14g08280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g36770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g249200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g36770
Coding sequences of Glyma17g36770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g36770.2 sequence type=CDS gene model=Glyma17g36770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGGGTGTCGTAGAGACGCATTATTGCTGACAAGAGATAAAGGCCAATCATCGGTCGGATCTCGAATCGTCGTCACCGGAGTTCTCTTCGGCTGCATCTTCGCCTTGTTCACCGGAGTTCCCACTCCACTTCACATTCCCAGCCCTTCTAAGATGGTTTCATCTGCATGCAAATCACCAGAACAAGTTAATGCACTTAAAGTTGATATTCTATCAGCAAAAGAGAAAAATTCCGAGCTGAAGAAGCAGGTCAAGGATCTTATGGAGAAGCTGCGTTTGGCCGAGCAAGGAAAGGGTCATGCTCAGGAACAGTTTGTTGTGCTTGGTGAGAGCCACAAGGCTGGGCCTTTTGGAACTGTCAAGGGTCTCAGAACCAATCCACCTGTCATTCCTGATGAATCTGTGAACCCCAGATTGGCCAAGATCTTGGGGGAAGTTGCTATTTATAAAGAACTTATTGTTGCTCTTGCTAACTCTAATGTGAAGGAGATGTTGCAGCTATGGTTCACCAACATCAAGAGGGTTGGCATACCTAATTATTTGGTTGTTGCCTTAGATGATAACATTGAAGAGTTCTGCAAATCCAATGATGTTCCTGTTTATAGAAGGGATCCTGATCAAGGTGTTGATGTGGTTGGTAAGAGTGGTGGTAGCCATGCTGTTTCAGGATTGAAATTTCGTATTTTGAGAGAATTTCTGCAACTGGGTTACAGTGTTCTTCTCTCGGATGTTGATATTATGTGGAATCTATGTCTGATGGTCACAATAATAGCTTACGGGTATAATGATGTCTTTGATGAACCCTCAATGGGTTGGGCTCGGTATGCTCATACCATGAGAATATGGGTTTCTAACTCTGGTTTCTTTTACATAAGGCCCACTCTTCCTTCAATGGAGCTCTTGGATCGTGTTGCAACTCGGCTCTCTAAAGACCCAAAATCATGGGATCAGGCAGTTTTTAACGAGGAGCTCTTTTTCCCTTCGCATCCCGGTTATGATGGACTTCACGCTGCAAAGAGGACAATGGATATGTACCTTTTTATGAACAGTATGGTTCTCTTTAAGACTGTCAGAAAAGATGCTAAGCTCAAGAAGCTGAAGCCAGTGATTGTACATGTTAATTACCATCATGATAAGTTTGCAAGGATGAAGGCAATAGTTGAGTTCTATGCCAATGGGAAACAGGATTCACTGGATCATTTCCCGGATGGTTCTGACTGA
Predicted protein sequences of Glyma17g36770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g36770.2 sequence type=predicted peptide gene model=Glyma17g36770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGCRRDALLLTRDKGQSSVGSRIVVTGVLFGCIFALFTGVPTPLHIPSPSKMVSSACKSPEQVNALKVDILSAKEKNSELKKQVKDLMEKLRLAEQGKGHAQEQFVVLGESHKAGPFGTVKGLRTNPPVIPDESVNPRLAKILGEVAIYKELIVALANSNVKEMLQLWFTNIKRVGIPNYLVVALDDNIEEFCKSNDVPVYRRDPDQGVDVVGKSGGSHAVSGLKFRILREFLQLGYSVLLSDVDIMWNLCLMVTIIAYGYNDVFDEPSMGWARYAHTMRIWVSNSGFFYIRPTLPSMELLDRVATRLSKDPKSWDQAVFNEELFFPSHPGYDGLHAAKRTMDMYLFMNSMVLFKTVRKDAKLKKLKPVIVHVNYHHDKFARMKAIVEFYANGKQDSLDHFPDGSD*